CPA Services in Rochester for S-Corps & Small Businesses

Looking for a CPA in Rochester, MN? SDO CPA provides virtual tax preparation, bookkeeping, payroll, and fractional CFO services to Rochester businesses specializing in S-Corps and partnerships. We provide upfront estimates — if scope changes, we discuss it first. Schedule a free consultation.
Serena Do, CPA — Managing Partner of SDO CPA

Serena Do, CPA

Managing Partner | Duncanville, TX (Serving Rochester Virtually)

18+ Years Experience | AICPA Member

Licensed CPA — Texas State Board of Public Accountancy

With 18+ years of experience helping business owners across the country, I bring specialized expertise to Rochester’s Healthcare, Medical Technology, Hospitality economy. Whether you’re managing physician compensation structures and medtech R&D credits or capitalizing on Rochester’s $5.6 billion Destination Medical Center initiative and Mayo Clinic’s 40,000-employee ecosystem, SDO CPA provides the virtual accounting support your business needs.

We offer cloud-based tax preparation, bookkeeping, payroll, and fractional CFO services designed for Rochester business owners who want proactive guidance — not just annual tax filing.

Key Takeaways: Rochester MN CPA Services

  • Virtual CPA services — Full tax, bookkeeping, and advisory support without geographic limitations
  • Minnesota tax expertise — Minnesota has a progressive state income tax (5.35% to 9.85%) requiring strategic planning and multi-state compliance
  • Industry focus — Specialized experience with Healthcare, Medical Technology, Hospitality
  • Transparent pricing — Upfront estimates starting at $300/month; if scope changes, we discuss it first
  • Responsive support — Direct CPA access, same-day responses

Accounting & Tax Services in Rochester, MN

Rochester is Minnesota’s medical capital, built around Mayo Clinic, the world’s number-one ranked hospital employing over 40,000 people. The $5.6 billion Destination Medical Center initiative is transforming downtown Rochester over a 20-year horizon, attracting medtech startups, hospitality development, and professional services firms. More than 2 million patients and visitors travel to Rochester annually, creating a healthcare-driven hospitality economy unlike any other city in the Midwest.

Minnesota’s progressive income tax tops out at 9.85%, making strategic tax planning essential for Rochester S-Corp owners and partnership operators. Physician practices need specialized compensation planning and partnership structures. Medtech companies developing devices through Mayo Clinic Ventures frequently qualify for R&D tax credits worth $50,000 to $250,000 annually. IBM Rochester’s technology center adds enterprise-scale demand, while hospitality operators serving visiting patients manage seasonal occupancy patterns that require careful cash flow management.

SDO CPA works with Rochester business owners across healthcare practices, medical technology companies, hospitality operations, and professional services to structure entities, optimize reasonable compensation, and coordinate federal and state tax strategies. For physician groups navigating partnership agreements or medtech founders seeking investor-ready financials, we provide monthly bookkeeping and fractional CFO services scaled to your growth stage.

Minnesota Tax Planning Tip

Minnesota’s top individual income tax rate of 9.85% is among the highest in the nation. S-Corp owners should carefully calibrate reasonable compensation since every dollar of W-2 salary is subject to both federal payroll taxes and Minnesota income tax. Timing estimated tax payments, maximizing retirement contributions, and evaluating the pass-through entity tax election can reduce your effective state tax burden significantly.

Rochester is home to over 8,000 small businesses and a population of 121,395. From Healthcare, Medical Technology, Hospitality to professional services, Rochester business owners need CPAs who understand physician compensation structures and medtech R&D credits and can provide year-round tax planning — not just compliance.

CPA Services for Rochester Businesses

Common Challenges for Rochester Business Owners

Challenge

Rochester businesses often face physician compensation structures and medtech R&D credits, making tax planning and entity structuring more complex than standard approaches allow.

Our Approach

We provide proactive tax planning and fractional CFO services tailored to Rochester’s healthcare-driven economy, helping you handle physician compensation structures and medtech R&D credits with confidence.

Challenge

Many Rochester business owners struggle to get timely responses from their CPA, especially during busy seasons when questions are most urgent.

Our Approach

SDO CPA provides direct access to your CPA team with same-day response times. No call centers, no waiting weeks for answers.

Challenge

Tax preparation alone doesn’t help Rochester business owners understand their financial position or make informed decisions throughout the year.

Our Approach

We deliver monthly financial reports with actionable insights, helping you understand cash flow, profitability, and tax liability before year-end.

“As a physician practice owner in Rochester, navigating partnership agreements and compensation planning requires a CPA who truly understands healthcare. SDO CPA handles the complexity so we can focus on patient care.”
— Dr. Sarah K., Physician practice owner in Rochester

How to Get Started With SDO CPA

1

Schedule Your Free Consultation

Book a call to discuss your Rochester business, current financial setup, and goals.

2

Get Your Custom Proposal

Receive a clear proposal with upfront estimates — if scope changes, we discuss it first.

3

Seamless Onboarding

We connect to your QuickBooks or Xero and organize your books within 30 days.

4

Ongoing Partnership

Monthly reports, proactive tax planning, and year-round CPA access.

Why Rochester Business Owners Choose SDO CPA

Minnesota Tax Expertise

We understand Minnesota has a progressive state income tax (5.35% to 9.85%) requiring strategic planning and help Rochester businesses maximize tax advantages while managing federal obligations and multi-state complexity.

Transparent Pricing

Clear monthly estimates for standard services. We scope your needs upfront and communicate before any additional work. See our pricing.

Cloud-Based & Virtual

Access your financials anywhere. We work with QuickBooks Online, Xero, Gusto, and Ramp to keep your Rochester business running smoothly.

S-Corp & Partnership Specialists

Our clients are pass-through entity owners. We handle reasonable compensation analysis, K-1 preparation, QBI optimization, and entity selection.

Responsive Communication

Get answers when you need them. Our team responds within one business day, and you’ll have direct access to your CPA.

Frequently Asked Questions

How much does a CPA cost for a small business in Rochester?
At SDO CPA, bookkeeping starts at $300-$500 per month for a single entity. Full-service packages including bookkeeping, tax planning, and advisory range from $1,000-$2,000 per month with upfront estimates — if scope changes, we discuss it first. View our pricing.
Can a virtual CPA serve my Rochester business?
Yes. CPAs can prepare tax returns and provide accounting services for clients in any state. SDO CPA serves Rochester businesses through secure cloud-based tools including QuickBooks Online, Gusto, and encrypted document sharing with the same quality as a local firm.
Do you specialize in Healthcare businesses?
Yes. Rochester’s Mayo Clinic ecosystem and healthcare sector has unique accounting needs including physician compensation planning, partnership structures, revenue cycle management, R&D tax credits for medtech companies, and compliance requirements that we address with tailored solutions.
What is the difference between a bookkeeper and a CPA?
A bookkeeper records transactions and maintains financial records. A CPA is a state-licensed professional who can prepare and sign tax returns, provide tax planning advice, represent you before the IRS, and offer strategic financial guidance that bookkeepers cannot.
Do you offer fractional CFO services for Rochester businesses?
Yes. Our fractional CFO services provide cash flow forecasting, budgeting, financial modeling, and strategic planning for Rochester businesses generating $500K+ in revenue that need financial leadership without a full-time hire.
Should my Rochester business be an S-Corp or LLC?
It depends on your net income. Generally, businesses earning over $60,000 in net profit may save on self-employment taxes by electing S-Corp status. Use our S-Corp tax calculator to estimate savings, then schedule a consultation for personalized analysis.
How quickly does SDO CPA respond to questions?
We respond to all client inquiries within one business day. For urgent tax matters, we prioritize same-day responses. You’ll have direct access to your CPA — no call centers or gatekeepers.
What accounting software do you work with?
We work with QuickBooks Online, Xero, Gusto for payroll, and Ramp for expense management. We’ll recommend the best setup for your Rochester business during your free consultation. Learn about our bookkeeping services.

Resources for Rochester Business Owners

Also Serving Minnesota

SDO CPA provides virtual CPA services to businesses throughout Minnesota and the Rochester metro area.

Ready to Work With a CPA Who Understands Rochester Businesses?

Schedule your free consultation today. We’ll analyze your tax situation and provide an upfront estimate with no obligation.

Schedule a Call
Licensing & Service Disclaimer: SDO CPA LLC is a Texas-licensed CPA firm serving clients in Minnesota under CPA practice mobility provisions. SDO CPA is not a Minnesota-licensed firm and does not hold a Minnesota firm permit. We do not maintain a physical office in Minnesota — all services are delivered remotely via secure video, phone, and digital collaboration tools. We will not perform attest services (audits, reviews, or compilations) for Minnesota entities. Services requiring CPA licensure are performed by Texas-licensed CPAs. Per Texas State Board of Public Accountancy regulations (22 TAC §501.82).